SRR7101131 - Ruspolia differens

Basic Information

Run: SRR7101131

Assay Type: AMPLICON

Biosample: SAMN09010856

Bytes: 60962940

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Masaka

Latitude/Longitude: 0.3267 S 31.7537 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-12-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101131

58.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 105

Chemoheterotrophy

Aerobic_Chemoheterotrophy 69

Aerobic_Chemoheterotrophy

Fermentation 33

Fermentation

Nitrate_Reduction 15

Nitrate_Reduction

Ureolysis 14

Ureolysis

Human_Pathogens_All 13

Human_Pathogens_All

Human_Associated 13

Human_Associated

Animal_Parasites_Or_Symbionts 13

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Methanol_Oxidation 6

Methanol_Oxidation

Methylotrophy 6

Methylotrophy

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Phototrophy 5

Phototrophy

Photoautotrophy 4

Photoautotrophy

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrite_Respiration 3

Nitrite_Respiration

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 2

Nitrogen_Fixation

Photoheterotrophy 2

Photoheterotrophy

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

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