SRR7101123 - Ruspolia differens

Basic Information

Run: SRR7101123

Assay Type: AMPLICON

Biosample: SAMN09010852

Bytes: 63858585

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Masaka

Latitude/Longitude: 0.3267 S 31.7537 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-12-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101123

60.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 121

Chemoheterotrophy

Aerobic_Chemoheterotrophy 77

Aerobic_Chemoheterotrophy

Fermentation 29

Fermentation

Ureolysis 23

Ureolysis

Nitrate_Reduction 19

Nitrate_Reduction

Methanol_Oxidation 17

Methanol_Oxidation

Methylotrophy 17

Methylotrophy

Animal_Parasites_Or_Symbionts 16

Animal_Parasites_Or_Symbionts

Human_Associated 14

Human_Associated

Human_Pathogens_All 11

Human_Pathogens_All

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Nitrate_Respiration 8

Nitrate_Respiration

Nitrogen_Respiration 8

Nitrogen_Respiration

Phototrophy 6

Phototrophy

Photosynthetic_Cyanobacteria 5

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 5

Oxygenic_Photoautotrophy

Photoautotrophy 5

Photoautotrophy

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Nitrite_Respiration 4

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 4

Dark_Oxidation_Of_Sulfur_Compounds

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Aerobic_Ammonia_Oxidation 2

Aerobic_Ammonia_Oxidation

Nitrification 2

Nitrification

Dark_Sulfur_Oxidation 2

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Manganese_Oxidation 2

Manganese_Oxidation

Invertebrate_Parasites 2

Invertebrate_Parasites

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Chitinolysis 1

Chitinolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photoheterotrophy 1

Photoheterotrophy

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