SRR7101120 - Ruspolia differens

Basic Information

Run: SRR7101120

Assay Type: AMPLICON

Biosample: SAMN09010855

Bytes: 80798875

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Masaka

Latitude/Longitude: 0.3267 S 31.7537 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-12-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101120

77.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 99

Chemoheterotrophy

Aerobic_Chemoheterotrophy 51

Aerobic_Chemoheterotrophy

Fermentation 47

Fermentation

Nitrate_Reduction 12

Nitrate_Reduction

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Human_Associated 10

Human_Associated

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 8

Human_Pathogens_All

Ureolysis 5

Ureolysis

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Phototrophy 4

Phototrophy

Nitrogen_Fixation 3

Nitrogen_Fixation

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Chitinolysis 2

Chitinolysis

Dark_Sulfur_Oxidation 2

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Photoheterotrophy 1

Photoheterotrophy

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