SRR7101119 - Ruspolia differens

Basic Information

Run: SRR7101119

Assay Type: AMPLICON

Biosample: SAMN09010870

Bytes: 38461530

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Kampala

Latitude/Longitude: 0.3476 N 32.5825 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-04-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101119

36.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 79

Chemoheterotrophy

Aerobic_Chemoheterotrophy 52

Aerobic_Chemoheterotrophy

Fermentation 22

Fermentation

Aromatic_Compound_Degradation 13

Aromatic_Compound_Degradation

Nitrate_Reduction 9

Nitrate_Reduction

Ureolysis 9

Ureolysis

Methanol_Oxidation 8

Methanol_Oxidation

Methylotrophy 8

Methylotrophy

Human_Pathogens_All 7

Human_Pathogens_All

Human_Associated 7

Human_Associated

Animal_Parasites_Or_Symbionts 7

Animal_Parasites_Or_Symbionts

Dark_Hydrogen_Oxidation 5

Dark_Hydrogen_Oxidation

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Nitrite_Respiration 4

Nitrite_Respiration

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Plant_Pathogen 1

Plant_Pathogen

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

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