SRR7101113 - Ruspolia differens

Basic Information

Run: SRR7101113

Assay Type: AMPLICON

Biosample: SAMN09010872

Bytes: 57556121

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Kampala

Latitude/Longitude: 0.3476 N 32.5825 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-04-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101113

54.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 72

Chemoheterotrophy

Fermentation 35

Fermentation

Aerobic_Chemoheterotrophy 32

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 7

Animal_Parasites_Or_Symbionts

Ureolysis 7

Ureolysis

Methanol_Oxidation 6

Methanol_Oxidation

Methylotrophy 6

Methylotrophy

Nitrate_Reduction 6

Nitrate_Reduction

Human_Associated 5

Human_Associated

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Human_Pathogens_All 3

Human_Pathogens_All

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Plant_Pathogen 1

Plant_Pathogen

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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