SRR7101104 - Ruspolia differens

Basic Information

Run: SRR7101104

Assay Type: AMPLICON

Biosample: SAMN09010847

Bytes: 45442060

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Masaka

Latitude/Longitude: 0.3267 S 31.7537 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-04-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101104

43.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 94

Chemoheterotrophy

Aerobic_Chemoheterotrophy 56

Aerobic_Chemoheterotrophy

Fermentation 32

Fermentation

Aromatic_Compound_Degradation 14

Aromatic_Compound_Degradation

Nitrate_Reduction 14

Nitrate_Reduction

Human_Pathogens_All 11

Human_Pathogens_All

Human_Associated 11

Human_Associated

Animal_Parasites_Or_Symbionts 11

Animal_Parasites_Or_Symbionts

Ureolysis 11

Ureolysis

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrite_Respiration 3

Nitrite_Respiration

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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