SRR7101093 - Ruspolia differens

Basic Information

Run: SRR7101093

Assay Type: AMPLICON

Biosample: SAMN09010886

Bytes: 69719483

Center Name: KU LEUVEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA453689

Geographic Information

Country: Uganda

Continent: Africa

Location Name: Uganda: Fort Portal

Latitude/Longitude: 0.6546 N 30.2801 E

Sample Information

Host: Ruspolia differens

Isolation: -

Biosample Model: -

Collection Date: 2016-05-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR7101093

66.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 72

Chemoheterotrophy

Aerobic_Chemoheterotrophy 38

Aerobic_Chemoheterotrophy

Fermentation 29

Fermentation

Human_Associated 11

Human_Associated

Animal_Parasites_Or_Symbionts 11

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 10

Human_Pathogens_All

Nitrate_Reduction 9

Nitrate_Reduction

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Ureolysis 6

Ureolysis

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Photoheterotrophy 2

Photoheterotrophy

Phototrophy 2

Phototrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Back to Amplicons List

Back to Table