SRR6903327 - Mus musculus

Basic Information

Run: SRR6903327

Assay Type: AMPLICON

Biosample: SAMN08800317

Bytes: 63629737

Center Name: COLUMBIA UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA445852

Geographic Information

Country: USA

Continent: North America

Location Name: USA: New York City

Latitude/Longitude: 40.71 N 74.01 W

Sample Information

Host: Mus musculus

Isolation: -

Biosample Model: -

Collection Date: 2015-09-10

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6903327
60.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 291
Fermentation 287
Animal_Parasites_Or_Symbionts 66
Human_Gut 65
Human_Associated 65
Mammal_Gut 65
Aerobic_Chemoheterotrophy 4
Xylanolysis 3
Aromatic_Compound_Degradation 3
Nitrate_Reduction 2
Sulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Human_Pathogens_Diarrhea 1
Human_Pathogens_All 1
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