SRR6837980 - Silvestritermes sp.

Basic Information

Run: SRR6837980

Assay Type: RNA-Seq

Biosample: SAMN08541381

Bytes: 8295990753

Center Name: LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: NextSeq 500

Library Layout: PAIRED

Bioproject: PRJNA434183

Geographic Information

Country: French Guiana

Continent: South America

Location Name: French Guiana

Latitude/Longitude: missing

Sample Information

Host: Silvestritermes sp.

Isolation: -

Biosample Model: -

Collection Date: 2024-03-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6837980

7.7 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 1917

Nitrate_Reduction

Chemoheterotrophy 125

Chemoheterotrophy

Aerobic_Chemoheterotrophy 69

Aerobic_Chemoheterotrophy

Methanogenesis 23

Methanogenesis

Fermentation 20

Fermentation

Hydrogenotrophic_Methanogenesis 19

Hydrogenotrophic_Methanogenesis

Aromatic_Compound_Degradation 16

Aromatic_Compound_Degradation

Methylotrophy 14

Methylotrophy

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 11

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Dark_Hydrogen_Oxidation 7

Dark_Hydrogen_Oxidation

Methanogenesis_By_Co2_Reduction_With_H2 6

Methanogenesis_By_Co2_Reduction_With_H2

Respiration_Of_Sulfur_Compounds 6

Respiration_Of_Sulfur_Compounds

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 6

Nonphotosynthetic_Cyanobacteria

Nitrite_Respiration 5

Nitrite_Respiration

Human_Pathogens_All 5

Human_Pathogens_All

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 4

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Methanol_Oxidation 3

Methanol_Oxidation

Sulfate_Respiration 3

Sulfate_Respiration

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrate_Ammonification 3

Nitrate_Ammonification

Nitrite_Ammonification 3

Nitrite_Ammonification

Ureolysis 3

Ureolysis

Sulfur_Respiration 2

Sulfur_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Sulfide_Oxidation 2

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 2

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Sulfite_Respiration 1

Sulfite_Respiration

Xylanolysis 1

Xylanolysis

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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