SRR6837979 - Labiotermes labralis

Basic Information

Run: SRR6837979

Assay Type: RNA-Seq

Biosample: SAMN08541386

Bytes: 4221171433

Center Name: LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: NextSeq 500

Library Layout: PAIRED

Bioproject: PRJNA434183

Geographic Information

Country: French Guiana

Continent: South America

Location Name: French Guiana

Latitude/Longitude: missing

Sample Information

Host: Labiotermes labralis

Isolation: -

Biosample Model: -

Collection Date: 2024-03-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6837979

3.9 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 1025

Nitrate_Reduction

Chemoheterotrophy 49

Chemoheterotrophy

Aerobic_Chemoheterotrophy 31

Aerobic_Chemoheterotrophy

Methanogenesis 12

Methanogenesis

Hydrogenotrophic_Methanogenesis 10

Hydrogenotrophic_Methanogenesis

Methylotrophy 9

Methylotrophy

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 8

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Fermentation 4

Fermentation

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 2

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Methanol_Oxidation 1

Methanol_Oxidation

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_All 1

Human_Pathogens_All

Human_Gut 1

Human_Gut

Human_Associated 1

Human_Associated

Mammal_Gut 1

Mammal_Gut

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Ureolysis 1

Ureolysis

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