SRR6837975 - Nasutitermes similis

Basic Information

Run: SRR6837975

Assay Type: RNA-Seq

Biosample: SAMN08541405

Bytes: 2120459965

Center Name: LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: NextSeq 500

Library Layout: PAIRED

Bioproject: PRJNA434183

Geographic Information

Country: French Guiana

Continent: South America

Location Name: French Guiana

Latitude/Longitude: missing

Sample Information

Host: Nasutitermes similis

Isolation: -

Biosample Model: -

Collection Date: 2024-03-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6837975

2.0 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 549

Nitrate_Reduction

Chemoheterotrophy 70

Chemoheterotrophy

Aerobic_Chemoheterotrophy 56

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 13

Aromatic_Compound_Degradation

Fermentation 6

Fermentation

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Methanogenesis_By_Co2_Reduction_With_H2 4

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 4

Hydrogenotrophic_Methanogenesis

Methanogenesis 4

Methanogenesis

Human_Pathogens_All 4

Human_Pathogens_All

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nitrite_Respiration 2

Nitrite_Respiration

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Ureolysis 2

Ureolysis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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