SRR6837973 - Microcerotermes sp.

Basic Information

Run: SRR6837973

Assay Type: RNA-Seq

Biosample: SAMN08541394

Bytes: 4790645502

Center Name: LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: NextSeq 500

Library Layout: PAIRED

Bioproject: PRJNA434183

Quality Control Information

Filter Percentage: 0.1608

QC Average Length: -

Retained Reads: 56076656

Geographic Information

Country: French Guiana

Continent: South America

Location Name: French Guiana

Latitude/Longitude: missing

Sample Information

Host: Microcerotermes sp.

Isolation: -

Biosample Model: -

Collection Date: 2024-03-16

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6837973
4.5 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 152
Chemoheterotrophy 32
Aerobic_Chemoheterotrophy 25
Human_Associated 5
Animal_Parasites_Or_Symbionts 5
Aromatic_Compound_Degradation 5
Human_Pathogens_All 4
Fermentation 3
Human_Gut 2
Mammal_Gut 2
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Back to Amplicons List
Back to Table