SRR6837970 - Anoplotermes banksi

Basic Information

Run: SRR6837970

Assay Type: RNA-Seq

Biosample: SAMN08541374

Bytes: 4880837267

Center Name: LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: NextSeq 500

Library Layout: PAIRED

Bioproject: PRJNA434183

Geographic Information

Country: French Guiana

Continent: South America

Location Name: French Guiana

Latitude/Longitude: missing

Sample Information

Host: Anoplotermes banksi

Isolation: -

Biosample Model: -

Collection Date: 2024-03-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6837970

4.5 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 738

Nitrate_Reduction

Chemoheterotrophy 111

Chemoheterotrophy

Aerobic_Chemoheterotrophy 67

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 18

Aromatic_Compound_Degradation

Fermentation 14

Fermentation

Hydrogenotrophic_Methanogenesis 12

Hydrogenotrophic_Methanogenesis

Methanogenesis 12

Methanogenesis

Methylotrophy 11

Methylotrophy

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 10

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Nitrate_Respiration 10

Nitrate_Respiration

Nitrogen_Respiration 10

Nitrogen_Respiration

Dark_Hydrogen_Oxidation 7

Dark_Hydrogen_Oxidation

Human_Associated 7

Human_Associated

Animal_Parasites_Or_Symbionts 7

Animal_Parasites_Or_Symbionts

Sulfur_Respiration 6

Sulfur_Respiration

Respiration_Of_Sulfur_Compounds 6

Respiration_Of_Sulfur_Compounds

Human_Pathogens_All 6

Human_Pathogens_All

Ureolysis 5

Ureolysis

Nitrogen_Fixation 4

Nitrogen_Fixation

Predatory_Or_Exoparasitic 4

Predatory_Or_Exoparasitic

Nitrite_Respiration 3

Nitrite_Respiration

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Nitrate_Ammonification 2

Nitrate_Ammonification

Nitrite_Ammonification 2

Nitrite_Ammonification

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Methanol_Oxidation 1

Methanol_Oxidation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

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