SRR6737501 - Cockroach

Basic Information

Run: SRR6737501

Assay Type: AMPLICON

Biosample: SAMN08500577

Bytes: 36484908

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Cockroach

Isolation: -

Biosample Model: -

Collection Date: 2016-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6737501

34.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 73

Chemoheterotrophy

Fermentation 63

Fermentation

Respiration_Of_Sulfur_Compounds 14

Respiration_Of_Sulfur_Compounds

Sulfate_Respiration 13

Sulfate_Respiration

Methanogenesis 6

Methanogenesis

Hydrogenotrophic_Methanogenesis 5

Hydrogenotrophic_Methanogenesis

Dark_Hydrogen_Oxidation 5

Dark_Hydrogen_Oxidation

Aerobic_Chemoheterotrophy 5

Aerobic_Chemoheterotrophy

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 3

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Methylotrophy 3

Methylotrophy

Methanogenesis_By_Co2_Reduction_With_H2 2

Methanogenesis_By_Co2_Reduction_With_H2

Sulfite_Respiration 2

Sulfite_Respiration

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Human_Pathogens_All 1

Human_Pathogens_All

Nitrate_Respiration 1

Nitrate_Respiration

Nitrate_Reduction 1

Nitrate_Reduction

Nitrogen_Respiration 1

Nitrogen_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

Ureolysis 1

Ureolysis

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