SRR6737488 - Cockroach

Basic Information

Run: SRR6737488

Assay Type: AMPLICON

Biosample: SAMN08500725

Bytes: 117562405

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Cockroach

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6737488
112.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 95
Fermentation 71
Methanogenesis 15
Hydrogenotrophic_Methanogenesis 12
Sulfate_Respiration 12
Respiration_Of_Sulfur_Compounds 12
Aerobic_Chemoheterotrophy 8
Dark_Hydrogen_Oxidation 7
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 4
Methylotrophy 4
Ureolysis 4
Methanogenesis_By_Disproportionation_Of_Methyl_Groups 3
Methanogenesis_By_Co2_Reduction_With_H2 3
Aromatic_Compound_Degradation 3
Sulfite_Respiration 2
Nitrate_Reduction 2
Aerobic_Ammonia_Oxidation 1
Nitrification 1
Thiosulfate_Respiration 1
Xylanolysis 1
Invertebrate_Parasites 1
Animal_Parasites_Or_Symbionts 1
Intracellular_Parasites 1
Plastic_Degradation 1
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