SRR6737424 - Cockroach

Basic Information

Run: SRR6737424

Assay Type: AMPLICON

Biosample: SAMN08500738

Bytes: 30299579

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Cockroach

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6737424

28.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 125

Chemoheterotrophy

Aerobic_Chemoheterotrophy 52

Aerobic_Chemoheterotrophy

Fermentation 51

Fermentation

Nitrogen_Fixation 5

Nitrogen_Fixation

Sulfate_Respiration 4

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 4

Respiration_Of_Sulfur_Compounds

Phototrophy 4

Phototrophy

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Methanogenesis 2

Methanogenesis

Aerobic_Ammonia_Oxidation 2

Aerobic_Ammonia_Oxidation

Nitrification 2

Nitrification

Sulfite_Respiration 2

Sulfite_Respiration

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Xylanolysis 2

Xylanolysis

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Ureolysis 2

Ureolysis

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Cellulolysis 1

Cellulolysis

Human_Gut 1

Human_Gut

Human_Associated 1

Human_Associated

Mammal_Gut 1

Mammal_Gut

Animal_Parasites_Or_Symbionts 1

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

Nitrate_Reduction 1

Nitrate_Reduction

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photoheterotrophy 1

Photoheterotrophy

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