SRR6737404 - Cockroach

Basic Information

Run: SRR6737404

Assay Type: AMPLICON

Biosample: SAMN08500753

Bytes: 27607269

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Cockroach

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6737404

26.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 128

Chemoheterotrophy

Aerobic_Chemoheterotrophy 59

Aerobic_Chemoheterotrophy

Fermentation 40

Fermentation

Phototrophy 7

Phototrophy

Photosynthetic_Cyanobacteria 6

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 6

Oxygenic_Photoautotrophy

Photoautotrophy 6

Photoautotrophy

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Ureolysis 4

Ureolysis

Nitrogen_Fixation 3

Nitrogen_Fixation

Intracellular_Parasites 3

Intracellular_Parasites

Methylotrophy 2

Methylotrophy

Sulfate_Respiration 2

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Xylanolysis 2

Xylanolysis

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Methanol_Oxidation 1

Methanol_Oxidation

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Cellulolysis 1

Cellulolysis

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Pathogens_All 1

Human_Pathogens_All

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photoheterotrophy 1

Photoheterotrophy

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