SRR6737399 - Cockroach

Basic Information

Run: SRR6737399

Assay Type: AMPLICON

Biosample: SAMN08500748

Bytes: 29846602

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Cockroach

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6737399
28.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 139
Aerobic_Chemoheterotrophy 64
Fermentation 32
Phototrophy 9
Photosynthetic_Cyanobacteria 8
Oxygenic_Photoautotrophy 8
Photoautotrophy 8
Methylotrophy 5
Nitrogen_Fixation 5
Predatory_Or_Exoparasitic 5
Methanol_Oxidation 3
Aerobic_Ammonia_Oxidation 3
Nitrification 3
Sulfate_Respiration 3
Respiration_Of_Sulfur_Compounds 3
Aromatic_Compound_Degradation 3
Nitrate_Reduction 3
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Dark_Hydrogen_Oxidation 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Methanotrophy 1
Methanogenesis_By_Co2_Reduction_With_H2 1
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1
Knallgas_Bacteria 1
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Hydrocarbon_Degradation 1
Iron_Respiration 1
Fumarate_Respiration 1
Intracellular_Parasites 1
Photoheterotrophy 1
Ureolysis 1
Back to Amplicons List
Back to Table