SRR6737328 - Cockroach

Basic Information

Run: SRR6737328

Assay Type: AMPLICON

Biosample: SAMN08500768

Bytes: 17549218

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Cockroach

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6737328

16.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 59

Chemoheterotrophy

Fermentation 30

Fermentation

Aerobic_Chemoheterotrophy 19

Aerobic_Chemoheterotrophy

Sulfate_Respiration 12

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 12

Respiration_Of_Sulfur_Compounds

Methanogenesis 5

Methanogenesis

Dark_Hydrogen_Oxidation 5

Dark_Hydrogen_Oxidation

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Hydrogenotrophic_Methanogenesis 4

Hydrogenotrophic_Methanogenesis

Nitrate_Reduction 3

Nitrate_Reduction

Methylotrophy 2

Methylotrophy

Sulfite_Respiration 2

Sulfite_Respiration

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Intracellular_Parasites 2

Intracellular_Parasites

Ureolysis 2

Ureolysis

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Methanol_Oxidation 1

Methanol_Oxidation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_All 1

Human_Pathogens_All

Human_Associated 1

Human_Associated

Animal_Parasites_Or_Symbionts 1

Animal_Parasites_Or_Symbionts

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