SRR6737285 - Termite

Basic Information

Run: SRR6737285

Assay Type: AMPLICON

Biosample: SAMN08500868

Bytes: 7589015

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA433530

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Termite

Isolation: -

Biosample Model: -

Collection Date: 1905-07-09

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6737285

7.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 79

Chemoheterotrophy

Aerobic_Chemoheterotrophy 50

Aerobic_Chemoheterotrophy

Fermentation 16

Fermentation

Nitrate_Reduction 5

Nitrate_Reduction

Ureolysis 5

Ureolysis

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Hydrogenotrophic_Methanogenesis 3

Hydrogenotrophic_Methanogenesis

Methanogenesis 3

Methanogenesis

Aerobic_Ammonia_Oxidation 3

Aerobic_Ammonia_Oxidation

Nitrification 3

Nitrification

Nitrogen_Fixation 3

Nitrogen_Fixation

Cellulolysis 3

Cellulolysis

Xylanolysis 3

Xylanolysis

Dark_Thiosulfate_Oxidation 3

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 3

Dark_Oxidation_Of_Sulfur_Compounds

Phototrophy 3

Phototrophy

Methanogenesis_By_Co2_Reduction_With_H2 2

Methanogenesis_By_Co2_Reduction_With_H2

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Intracellular_Parasites 2

Intracellular_Parasites

Photoheterotrophy 2

Photoheterotrophy

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Methylotrophy 1

Methylotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Back to Amplicons List

Back to Table