SRR6473695 - Lasius claviger

Basic Information

Run: SRR6473695

Assay Type: AMPLICON

Biosample: SAMN08331270

Bytes: 31317613

Center Name: VRIJE UNIVERSITEIT AMSTERDAM

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA428829

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Millbrook, NY

Latitude/Longitude: 41.76 N 73.75 W

Sample Information

Host: Lasius claviger

Isolation: -

Biosample Model: -

Collection Date: 2014-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6473695

29.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 50

Chemoheterotrophy

Aerobic_Chemoheterotrophy 36

Aerobic_Chemoheterotrophy

Fermentation 13

Fermentation

Nitrate_Reduction 7

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Nitrite_Respiration 5

Nitrite_Respiration

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methylotrophy 4

Methylotrophy

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Methanol_Oxidation 3

Methanol_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Ureolysis 2

Ureolysis

Methanotrophy 1

Methanotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Plant_Pathogen 1

Plant_Pathogen

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

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