SRR6473670 - Lasius

Basic Information

Run: SRR6473670

Assay Type: AMPLICON

Biosample: SAMN08331489

Bytes: 22614576

Center Name: VRIJE UNIVERSITEIT AMSTERDAM

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA428829

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Millbrook, NY

Latitude/Longitude: 41.76 N 73.75 W

Sample Information

Host: Lasius

Isolation: -

Biosample Model: -

Collection Date: 2015-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6473670

21.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 36

Chemoheterotrophy

Aerobic_Chemoheterotrophy 29

Aerobic_Chemoheterotrophy

Nitrate_Reduction 6

Nitrate_Reduction

Fermentation 5

Fermentation

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Human_Pathogens_All 4

Human_Pathogens_All

Ureolysis 4

Ureolysis

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrite_Respiration 3

Nitrite_Respiration

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Sulfate_Respiration 1

Sulfate_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Arsenite_Oxidation_Detoxification 1

Arsenite_Oxidation_Detoxification

Dissimilatory_Arsenite_Oxidation 1

Dissimilatory_Arsenite_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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