SRR6452672 - Pseudomyrmex gracilis

Basic Information

Run: SRR6452672

Assay Type: AMPLICON

Biosample: SAMN08329857

Bytes: 6737186

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA429121

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida, Seminole Co., Chuluota Wilderness Area

Latitude/Longitude: 28.62 N 81.06 W

Sample Information

Host: Pseudomyrmex gracilis

Isolation: -

Biosample Model: -

Collection Date: 2012-03-27

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6452672

6.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 47

Chemoheterotrophy

Aerobic_Chemoheterotrophy 36

Aerobic_Chemoheterotrophy

Nitrate_Reduction 9

Nitrate_Reduction

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Ureolysis 7

Ureolysis

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Photosynthetic_Cyanobacteria 4

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 4

Oxygenic_Photoautotrophy

Photoautotrophy 4

Photoautotrophy

Phototrophy 4

Phototrophy

Fermentation 3

Fermentation

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Manganese_Oxidation 1

Manganese_Oxidation

Invertebrate_Parasites 1

Invertebrate_Parasites

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Back to Amplicons List

Back to Table