SRR6452644 - Pseudomyrmex gracilis

Basic Information

Run: SRR6452644

Assay Type: AMPLICON

Biosample: SAMN08329735

Bytes: 6318034

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA429121

Geographic Information

Country: Costa Rica

Continent: North America

Location Name: Costa Rica: Area de Conservacion Guanacaste, Barrachas trail

Latitude/Longitude: 10.84 N 85.62 W

Sample Information

Host: Pseudomyrmex gracilis

Isolation: -

Biosample Model: -

Collection Date: 2012-06-19

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6452644

6.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 45

Chemoheterotrophy

Aerobic_Chemoheterotrophy 32

Aerobic_Chemoheterotrophy

Intracellular_Parasites 9

Intracellular_Parasites

Fermentation 8

Fermentation

Ureolysis 8

Ureolysis

Methanol_Oxidation 6

Methanol_Oxidation

Methylotrophy 6

Methylotrophy

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 4

Nitrate_Reduction

Nitrogen_Fixation 3

Nitrogen_Fixation

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Associated 2

Human_Associated

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Human_Pathogens_All 1

Human_Pathogens_All

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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