SRR6452640 - Pseudomyrmex simplex

Basic Information

Run: SRR6452640

Assay Type: AMPLICON

Biosample: SAMN08329474

Bytes: 3575580

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA429121

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida, Key Largo

Latitude/Longitude: 25.23 N 80.33 W

Sample Information

Host: Pseudomyrmex simplex

Isolation: -

Biosample Model: -

Collection Date: 2007-08-29

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6452640

3.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 32

Chemoheterotrophy

Aerobic_Chemoheterotrophy 20

Aerobic_Chemoheterotrophy

Fermentation 9

Fermentation

Nitrate_Reduction 6

Nitrate_Reduction

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Ureolysis 4

Ureolysis

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrite_Respiration 3

Nitrite_Respiration

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Gut 2

Human_Gut

Human_Associated 2

Human_Associated

Mammal_Gut 2

Mammal_Gut

Intracellular_Parasites 2

Intracellular_Parasites

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Sulfate_Respiration 1

Sulfate_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Chitinolysis 1

Chitinolysis

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 1

Human_Pathogens_All

Iron_Respiration 1

Iron_Respiration

Fumarate_Respiration 1

Fumarate_Respiration

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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