SRR6452639 - Pseudomyrmex simplex

Basic Information

Run: SRR6452639

Assay Type: AMPLICON

Biosample: SAMN08329475

Bytes: 5701287

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA429121

Quality Control Information

Filter Percentage: 0.0

QC Average Length: 245

Retained Reads: 31190

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida, Key Largo

Latitude/Longitude: 25.23 N 80.33 W

Sample Information

Host: Pseudomyrmex simplex

Isolation: -

Biosample Model: -

Collection Date: 2007-08-29

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6452639

5.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42

Chemoheterotrophy

Aerobic_Chemoheterotrophy 25

Aerobic_Chemoheterotrophy

Fermentation 17

Fermentation

Nitrate_Reduction 11

Nitrate_Reduction

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Photosynthetic_Cyanobacteria 5

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 5

Oxygenic_Photoautotrophy

Photoautotrophy 5

Photoautotrophy

Phototrophy 5

Phototrophy

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Dark_Hydrogen_Oxidation 4

Dark_Hydrogen_Oxidation

Nitrite_Respiration 4

Nitrite_Respiration

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrogen_Fixation 3

Nitrogen_Fixation

Ureolysis 3

Ureolysis

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Sulfur_Respiration 1

Sulfur_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Fumarate_Respiration 1

Fumarate_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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