SRR6452631 - Pseudomyrmex nigropilosus

Basic Information

Run: SRR6452631

Assay Type: WGS

Biosample: SAMN08329902

Bytes: 1062484258

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA429121

Geographic Information

Country: Costa Rica

Continent: North America

Location Name: Costa Rica: Area de Conservacion Guanacaste, Playa Naranjo

Latitude/Longitude: 10.78 N 85.67 W

Sample Information

Host: Pseudomyrmex nigropilosus

Isolation: -

Biosample Model: -

Collection Date: 2012-06-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6452631
1013.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 14
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Fermentation 1
Human_Pathogens_All 1
Human_Gut 1
Human_Associated 1
Mammal_Gut 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Chemoheterotrophy 1
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