SRR6452297 - Pseudomyrmex gracilis

Basic Information

Run: SRR6452297

Assay Type: AMPLICON

Biosample: SAMN08329498

Bytes: 1985205

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA429121

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Florida, Alachua Co., San Felasco Park

Latitude/Longitude: 29.71 N 82.39 W

Sample Information

Host: Pseudomyrmex gracilis

Isolation: -

Biosample Model: -

Collection Date: 2012-03-27

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6452297

1.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 52

Chemoheterotrophy

Aerobic_Chemoheterotrophy 28

Aerobic_Chemoheterotrophy

Fermentation 18

Fermentation

Nitrate_Reduction 9

Nitrate_Reduction

Photosynthetic_Cyanobacteria 8

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 8

Oxygenic_Photoautotrophy

Photoautotrophy 8

Photoautotrophy

Phototrophy 8

Phototrophy

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Aerobic_Ammonia_Oxidation 2

Aerobic_Ammonia_Oxidation

Nitrification 2

Nitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Cellulolysis 2

Cellulolysis

Human_Gut 2

Human_Gut

Human_Associated 2

Human_Associated

Mammal_Gut 2

Mammal_Gut

Aromatic_Compound_Degradation 2

Aromatic_Compound_Degradation

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Intracellular_Parasites 2

Intracellular_Parasites

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Ureolysis 1

Ureolysis

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