SRR6452192 - Pseudomyrmex gracilis

Basic Information

Run: SRR6452192

Assay Type: AMPLICON

Biosample: SAMN08329579

Bytes: 5116724

Center Name: PRINCETON UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA429121

Geographic Information

Country: Costa Rica

Continent: North America

Location Name: Costa Rica: Area de Conservacion Guanacaste, Barrachas trail

Latitude/Longitude: 10.84 N 85.62 W

Sample Information

Host: Pseudomyrmex gracilis

Isolation: -

Biosample Model: -

Collection Date: 2012-06-13

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR6452192

4.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 20

Chemoheterotrophy

Aerobic_Chemoheterotrophy 12

Aerobic_Chemoheterotrophy

Fermentation 7

Fermentation

Nitrate_Reduction 6

Nitrate_Reduction

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Sulfate_Respiration 1

Sulfate_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 1

Human_Gut

Human_Associated 1

Human_Associated

Mammal_Gut 1

Mammal_Gut

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Fumarate_Respiration 1

Fumarate_Respiration

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