SRR6429177 - Glossina palpalis gambiensis

Basic Information

Run: SRR6429177

Assay Type: AMPLICON

Biosample: SAMN08272765

Bytes: 494356667

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA427806

Geographic Information

Country: Austria

Continent: Europe

Location Name: Austria: Seibersdorf

Latitude/Longitude: 47.974713 N 16.51 E

Sample Information

Host: Glossina palpalis gambiensis

Isolation: -

Biosample Model: -

Collection Date: 2013-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6429177
471.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 341
Aerobic_Chemoheterotrophy 201
Fermentation 150
Animal_Parasites_Or_Symbionts 96
Nitrate_Reduction 85
Human_Associated 65
Human_Pathogens_All 56
Ureolysis 37
Nitrogen_Fixation 36
Aromatic_Compound_Degradation 26
Nitrate_Respiration 16
Nitrogen_Respiration 16
Aliphatic_Non_Methane_Hydrocarbon_Degradation 14
Hydrocarbon_Degradation 14
Human_Gut 13
Mammal_Gut 13
Methanol_Oxidation 9
Methylotrophy 9
Dark_Oxidation_Of_Sulfur_Compounds 9
Plant_Pathogen 9
Human_Pathogens_Nosocomia 8
Xylanolysis 4
Intracellular_Parasites 4
Chitinolysis 2
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