SRR6131288 - Cassida rubiginosa

Basic Information

Run: SRR6131288

Assay Type: AMPLICON

Biosample: SAMN07736445

Bytes: 63850336

Center Name: EMORY UNIVERSITY

Classification: FLX

Sequencing Information

Instrument: 454 GS FLX Titanium

Library Layout: SINGLE

Bioproject: PRJNA413097

Geographic Information

Country: New Zealand

Continent: Oceania

Location Name: New Zealand

Latitude/Longitude: 43.39 S 172.29 E

Sample Information

Host: Cassida rubiginosa

Isolation: -

Biosample Model: -

Collection Date: 2016-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR6131288
60.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

No functional annotation data available

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