SRR5946163 - None

Basic Information

Run: SRR5946163

Assay Type: AMPLICON

Biosample: SAMN07520860

Bytes: 629508

Center Name: UNIVERSITY OF REGGIO CALABRIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA398982

Geographic Information

Country: Italy

Continent: Europe

Location Name: Italy:Reggio Calabria

Latitude/Longitude: 38.4 N 15.91 E

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 1905-07-07

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5946163
614.8 KB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 11
Aerobic_Chemoheterotrophy 10
Xylanolysis 1
Fermentation 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Aromatic_Compound_Degradation 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
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