SRR5929442 - Myzus persicae

Basic Information

Run: SRR5929442

Assay Type: AMPLICON

Biosample: SAMN07500793

Bytes: 74614552

Center Name: UNIVERSITY OF CALIFORNIA RIVERSIDE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA398052

Quality Control Information

Filter Percentage: 1.0

QC Average Length: 333

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Riverside, California

Sample Information

Host: Myzus persicae

Isolation: -

Biosample Model: -

Collection Date: 2017-06-15

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR5929442

71.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 358

Chemoheterotrophy

Aerobic_Chemoheterotrophy 226

Aerobic_Chemoheterotrophy

Nitrate_Reduction 204

Nitrate_Reduction

Fermentation 133

Fermentation

Animal_Parasites_Or_Symbionts 58

Animal_Parasites_Or_Symbionts

Ureolysis 36

Ureolysis

Nitrate_Respiration 26

Nitrate_Respiration

Nitrogen_Respiration 26

Nitrogen_Respiration

Methanol_Oxidation 23

Methanol_Oxidation

Methylotrophy 23

Methylotrophy

Human_Pathogens_All 20

Human_Pathogens_All

Human_Associated 20

Human_Associated

Nitrogen_Fixation 18

Nitrogen_Fixation

Nitrate_Denitrification 11

Nitrate_Denitrification

Nitrite_Denitrification 11

Nitrite_Denitrification

Denitrification 11

Denitrification

Nitrite_Respiration 11

Nitrite_Respiration

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Dark_Hydrogen_Oxidation 6

Dark_Hydrogen_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 6

Dark_Oxidation_Of_Sulfur_Compounds

Aerobic_Ammonia_Oxidation 2

Aerobic_Ammonia_Oxidation

Nitrification 2

Nitrification

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Intracellular_Parasites 2

Intracellular_Parasites

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Xylanolysis 1

Xylanolysis

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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