SRR5928725 - not applicable

Basic Information

Run: SRR5928725

Assay Type: AMPLICON

Biosample: SAMN07498388

Bytes: 929761

Center Name: UNIVERSITY OF PUERTO RICO -RIO PIEDRAS

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX

Library Layout: SINGLE

Bioproject: PRJNA397969

Geographic Information

Country: Panama

Continent: North America

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2011-06-24

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5928725
908.0 KB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 4
Fermentation 2
Aerobic_Chemoheterotrophy 2
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
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