SRR5575883 - Carnegiea gigantea

Basic Information

Run: SRR5575883

Assay Type: AMPLICON

Biosample: SAMN06883970

Bytes: 26161764

Center Name: UNIVERSITY OF MARYLAND

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA385203

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: SON,Bahia de Kino

Latitude/Longitude: 28.49516 N 111.48036 W

Sample Information

Host: Carnegiea gigantea

Isolation: -

Biosample Model: -

Collection Date: 2024-10-14

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR5575883

24.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 128

Chemoheterotrophy

Fermentation 59

Fermentation

Aerobic_Chemoheterotrophy 53

Aerobic_Chemoheterotrophy

Nitrate_Reduction 11

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Human_Associated 7

Human_Associated

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Human_Pathogens_All 4

Human_Pathogens_All

Ureolysis 4

Ureolysis

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Aerobic_Ammonia_Oxidation 2

Aerobic_Ammonia_Oxidation

Nitrification 2

Nitrification

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Iron_Respiration 2

Iron_Respiration

Phototrophy 2

Phototrophy

Reductive_Acetogenesis 2

Reductive_Acetogenesis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

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