SRR5575879 - Pachycereus pringlei

Basic Information

Run: SRR5575879

Assay Type: AMPLICON

Biosample: SAMN06883962

Bytes: 43534634

Center Name: UNIVERSITY OF MARYLAND

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA385203

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: SON,Bahia de Kino

Latitude/Longitude: 28.49516 N 111.48036 W

Sample Information

Host: Pachycereus pringlei

Isolation: -

Biosample Model: -

Collection Date: 2024-10-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR5575879

41.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 268

Chemoheterotrophy

Aerobic_Chemoheterotrophy 174

Aerobic_Chemoheterotrophy

Nitrate_Reduction 57

Nitrate_Reduction

Nitrate_Respiration 53

Nitrate_Respiration

Nitrogen_Respiration 53

Nitrogen_Respiration

Hydrocarbon_Degradation 38

Hydrocarbon_Degradation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 37

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Human_Pathogens_All 34

Human_Pathogens_All

Human_Associated 34

Human_Associated

Animal_Parasites_Or_Symbionts 34

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 27

Methanol_Oxidation

Methylotrophy 27

Methylotrophy

Dark_Hydrogen_Oxidation 15

Dark_Hydrogen_Oxidation

Nitrate_Denitrification 13

Nitrate_Denitrification

Nitrite_Denitrification 13

Nitrite_Denitrification

Denitrification 13

Denitrification

Nitrite_Respiration 13

Nitrite_Respiration

Fermentation 12

Fermentation

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Ureolysis 6

Ureolysis

Photoheterotrophy 3

Photoheterotrophy

Phototrophy 3

Phototrophy

Nitrogen_Fixation 2

Nitrogen_Fixation

Iron_Respiration 1

Iron_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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