SRR5575875 - Pachycereus pringlei

Basic Information

Run: SRR5575875

Assay Type: AMPLICON

Biosample: SAMN06883966

Bytes: 35603972

Center Name: UNIVERSITY OF MARYLAND

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA385203

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: SON,Bahia de Kino

Latitude/Longitude: 28.49516 N 111.48036 W

Sample Information

Host: Pachycereus pringlei

Isolation: -

Biosample Model: -

Collection Date: 2024-10-14

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5575875
34.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 103
Aerobic_Chemoheterotrophy 61
Fermentation 22
Methanol_Oxidation 6
Methylotrophy 6
Nitrate_Reduction 6
Nitrate_Respiration 4
Nitrogen_Respiration 4
Human_Pathogens_All 3
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Dark_Hydrogen_Oxidation 2
Ureolysis 2
Reductive_Acetogenesis 2
Nitrogen_Fixation 1
Intracellular_Parasites 1
Back to Amplicons List
Back to Table