SRR5575843 - Pachycereus pringlei

Basic Information

Run: SRR5575843

Assay Type: AMPLICON

Biosample: SAMN06883947

Bytes: 12434587

Center Name: UNIVERSITY OF MARYLAND

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA385203

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: SON,Bahia de Kino

Latitude/Longitude: 28.50216 N 111.47418 W

Sample Information

Host: Pachycereus pringlei

Isolation: -

Biosample Model: -

Collection Date: 2024-09-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5575843
11.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 90
Aerobic_Chemoheterotrophy 43
Fermentation 13
Nitrate_Reduction 5
Methanol_Oxidation 3
Methylotrophy 3
Animal_Parasites_Or_Symbionts 3
Iron_Respiration 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Dark_Hydrogen_Oxidation 2
Human_Associated 2
Ureolysis 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Cellulolysis 1
Human_Pathogens_All 1
Aromatic_Compound_Degradation 1
Hydrocarbon_Degradation 1
Nonphotosynthetic_Cyanobacteria 1
Photoheterotrophy 1
Phototrophy 1
Reductive_Acetogenesis 1
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