SRR5575840 - Pachycereus pringlei

Basic Information

Run: SRR5575840

Assay Type: AMPLICON

Biosample: SAMN06883953

Bytes: 10786778

Center Name: UNIVERSITY OF MARYLAND

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA385203

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: SON,Bahia de Kino

Latitude/Longitude: 28.49516 N 111.48036 W

Sample Information

Host: Pachycereus pringlei

Isolation: -

Biosample Model: -

Collection Date: 2024-10-14

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR5575840

10.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 82

Chemoheterotrophy

Aerobic_Chemoheterotrophy 41

Aerobic_Chemoheterotrophy

Nitrate_Reduction 13

Nitrate_Reduction

Nitrate_Respiration 9

Nitrate_Respiration

Nitrogen_Respiration 9

Nitrogen_Respiration

Human_Pathogens_All 8

Human_Pathogens_All

Human_Associated 8

Human_Associated

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Fermentation 7

Fermentation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 3

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Aromatic_Compound_Degradation 2

Aromatic_Compound_Degradation

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Photoheterotrophy 2

Photoheterotrophy

Phototrophy 2

Phototrophy

Ureolysis 2

Ureolysis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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