SRR5483821 - Panchlora sp.

Basic Information

Run: SRR5483821

Assay Type: AMPLICON

Biosample: SAMN06842700

Bytes: 26364175

Center Name: UW-MADISON

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX

Library Layout: SINGLE

Bioproject: PRJNA384603

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama

Latitude/Longitude: 9.11 N 79.7 W

Sample Information

Host: Panchlora sp.

Isolation: -

Biosample Model: -

Collection Date: 2010-11-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5483821
25.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 3
Fermentation 2
Aerobic_Chemoheterotrophy 1
Human_Gut 1
Human_Associated 1
Mammal_Gut 1
Animal_Parasites_Or_Symbionts 1
Aromatic_Compound_Degradation 1
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