SRR5454507 - Atta cephalotes

Basic Information

Run: SRR5454507

Assay Type: AMPLICON

Biosample: SAMN06761225

Bytes: 7507693

Center Name: UNIVERSITY OF COPENHAGEN

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA383138

Quality Control Information

Filter Percentage: 0.0233

QC Average Length: -

Retained Reads: 48334

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Gamboa

Latitude/Longitude: missing

Sample Information

Host: Atta cephalotes

Isolation: -

Biosample Model: -

Collection Date: 2024-05-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5454507
7.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 6
Aerobic_Chemoheterotrophy 5
Methanol_Oxidation 1
Methylotrophy 1
Aromatic_Compound_Degradation 1
Nitrate_Reduction 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
Ureolysis 1
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