SRR5349222 - Thaumetopoea pityocampa

Basic Information

Run: SRR5349222

Assay Type: AMPLICON

Biosample: SAMN06603759

Bytes: 3646232

Center Name: UNIVERSITY "MEDITERRANEA" OF REGGIO CALABRIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA379119

Geographic Information

Country: Italy

Continent: Europe

Location Name: Italy: Reggio Calabria

Latitude/Longitude: 38.10 N 15.9 E

Sample Information

Host: Thaumetopoea pityocampa

Isolation: -

Biosample Model: -

Collection Date: 2024-01-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5349222
3.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 39
Aerobic_Chemoheterotrophy 33
Aromatic_Compound_Degradation 5
Nitrate_Reduction 2
Ureolysis 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrogen_Fixation 1
Cellulolysis 1
Xylanolysis 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Fermentation 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
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