SRR5349207 - None

Basic Information

Run: SRR5349207

Assay Type: RNA-Seq

Biosample: SAMN05271585

Bytes: 82248444

Center Name: QINGDAO INSTITUTE OF BIOENERGY AND BIOPROCESS TECH

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA326217

Geographic Information

Country: China

Continent: Asia

Location Name: China: Qingdao

Latitude/Longitude: 36.04 N 120.19000000 E

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2024-01-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5349207
78.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 166
Fermentation 159
Nitrate_Reduction 57
Human_Associated 23
Animal_Parasites_Or_Symbionts 23
Respiration_Of_Sulfur_Compounds 22
Human_Gut 22
Mammal_Gut 22
Sulfate_Respiration 15
Dark_Hydrogen_Oxidation 13
Nitrate_Respiration 13
Nitrogen_Respiration 13
Sulfite_Respiration 12
Nitrate_Ammonification 11
Nitrite_Ammonification 11
Nitrite_Respiration 11
Fumarate_Respiration 11
Methylotrophy 7
Sulfur_Respiration 7
Methanol_Oxidation 6
Reductive_Acetogenesis 6
Hydrogenotrophic_Methanogenesis 4
Methanogenesis 4
Thiosulfate_Respiration 4
Iron_Respiration 4
Methanogenesis_By_Co2_Reduction_With_H2 3
Aromatic_Compound_Degradation 3
Chitinolysis 2
Xylanolysis 2
Aerobic_Chemoheterotrophy 2
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1
Human_Pathogens_All 1
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