SRR5349202 - Thaumetopoea pityocampa

Basic Information

Run: SRR5349202

Assay Type: AMPLICON

Biosample: SAMN06603593

Bytes: 7536438

Center Name: UNIVERSITY "MEDITERRANEA" OF REGGIO CALABRIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA379119

Geographic Information

Country: Italy

Continent: Europe

Location Name: Italy: Reggio Calabria

Latitude/Longitude: 38.10 N 15.9 E

Sample Information

Host: Thaumetopoea pityocampa

Isolation: -

Biosample Model: -

Collection Date: 2024-01-16

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5349202
7.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 102
Aerobic_Chemoheterotrophy 76
Aromatic_Compound_Degradation 8
Nitrate_Reduction 8
Methanol_Oxidation 7
Methylotrophy 7
Nitrate_Respiration 5
Nitrogen_Respiration 5
Ureolysis 5
Cellulolysis 4
Human_Pathogens_All 4
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Intracellular_Parasites 4
Xylanolysis 3
Fermentation 3
Predatory_Or_Exoparasitic 3
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrite_Respiration 2
Nitrogen_Fixation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Manganese_Oxidation 1
Nonphotosynthetic_Cyanobacteria 1
Photoheterotrophy 1
Phototrophy 1
Back to Amplicons List
Back to Table