SRR5328931 - Cynopterus sphinx

Basic Information

Run: SRR5328931

Assay Type: AMPLICON

Biosample: SAMN06554433

Bytes: 22973706

Center Name: GUANGDONG INSTITUTE OF APPLIED BIOLOGICAL RESOURCES

Classification: 16S and 18S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA378168

Geographic Information

Country: China

Continent: Asia

Location Name: China: Guangdong, Guangzhou, Haizhu district

Latitude/Longitude: not collected

Sample Information

Host: Cynopterus sphinx

Isolation: -

Biosample Model: -

Collection Date: 2016-04-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5328931
21.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 20
Fermentation 12
Aerobic_Chemoheterotrophy 8
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Human_Pathogens_All 2
Aromatic_Compound_Degradation 2
Chitinolysis 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Meningitis 1
Human_Gut 1
Mammal_Gut 1
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