SRR5319332 - Coffea arabica
Basic Information
Run: SRR5319332
Assay Type: AMPLICON
Biosample: SAMN06545442
Bytes: 82072453
Center Name: UNIVERSITY OF PUERTO RICO-RIO PIEDRAS
Classification: 16S
Sequencing Information
Instrument: Illumina MiSeq
Library Layout: PAIRED
Bioproject: PRJNA378359
Geographic Information
Country: Puerto Rico
Continent: North America
Location Name: Puerto Rico
Latitude/Longitude: 18.178444 N 66.743333 W
Sample Information
Environmental Information
Download Files
Analysis Files
Raw Sequencing Files
Direct download from NCBI SRA
Run ID
File Size
SRR5319332
78.3 MB
Download
Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.
Taxonomic Classification
Functional Annotation
Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.
Chemoheterotrophy
58
Chemoheterotrophy
Aerobic_Chemoheterotrophy
47
Aerobic_Chemoheterotrophy
Methanol_Oxidation
6
Methanol_Oxidation
Methylotrophy
6
Methylotrophy
Ureolysis
6
Ureolysis
Fermentation
4
Fermentation
Animal_Parasites_Or_Symbionts
4
Animal_Parasites_Or_Symbionts
Human_Pathogens_All
3
Human_Pathogens_All
Human_Associated
3
Human_Associated
Aromatic_Compound_Degradation
3
Aromatic_Compound_Degradation
Nitrate_Reduction
3
Nitrate_Reduction
Intracellular_Parasites
2
Intracellular_Parasites
Nitrogen_Fixation
1
Nitrogen_Fixation
Dark_Oxidation_Of_Sulfur_Compounds
1
Dark_Oxidation_Of_Sulfur_Compounds
Aliphatic_Non_Methane_Hydrocarbon_Degradation
1
Aliphatic_Non_Methane_Hydrocarbon_Degradation
Hydrocarbon_Degradation
1
Hydrocarbon_Degradation
Nitrate_Respiration
1
Nitrate_Respiration
Nitrogen_Respiration
1
Nitrogen_Respiration
Back
to Table