SRR5319330 - Coffea arabica
Basic Information
Run: SRR5319330
Assay Type: AMPLICON
Biosample: SAMN06545444
Bytes: 98342343
Center Name: UNIVERSITY OF PUERTO RICO-RIO PIEDRAS
Classification: 16S
Sequencing Information
Instrument: Illumina MiSeq
Library Layout: PAIRED
Bioproject: PRJNA378359
Geographic Information
Country: Puerto Rico
Continent: North America
Location Name: Puerto Rico
Latitude/Longitude: 18.179305 N 66.773333 W
Sample Information
Environmental Information
Download Files
Analysis Files
Raw Sequencing Files
Direct download from NCBI SRA
Run ID
File Size
SRR5319330
93.8 MB
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Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.
Taxonomic Classification
Functional Annotation
Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.
Chemoheterotrophy
34
Chemoheterotrophy
Aerobic_Chemoheterotrophy
26
Aerobic_Chemoheterotrophy
Fermentation
6
Fermentation
Nitrate_Reduction
6
Nitrate_Reduction
Animal_Parasites_Or_Symbionts
5
Animal_Parasites_Or_Symbionts
Human_Pathogens_All
4
Human_Pathogens_All
Human_Associated
4
Human_Associated
Nitrate_Respiration
4
Nitrate_Respiration
Nitrogen_Respiration
4
Nitrogen_Respiration
Methanol_Oxidation
3
Methanol_Oxidation
Methylotrophy
3
Methylotrophy
Aromatic_Compound_Degradation
2
Aromatic_Compound_Degradation
Intracellular_Parasites
2
Intracellular_Parasites
Ureolysis
2
Ureolysis
Nitrate_Denitrification
1
Nitrate_Denitrification
Nitrite_Denitrification
1
Nitrite_Denitrification
Denitrification
1
Denitrification
Dark_Hydrogen_Oxidation
1
Dark_Hydrogen_Oxidation
Nitrite_Respiration
1
Nitrite_Respiration
Human_Pathogens_Nosocomia
1
Human_Pathogens_Nosocomia
Aliphatic_Non_Methane_Hydrocarbon_Degradation
1
Aliphatic_Non_Methane_Hydrocarbon_Degradation
Hydrocarbon_Degradation
1
Hydrocarbon_Degradation
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