SRR5319324 - Coffea arabica
Basic Information
Run: SRR5319324
Assay Type: AMPLICON
Biosample: SAMN06545450
Bytes: 106631829
Center Name: UNIVERSITY OF PUERTO RICO-RIO PIEDRAS
Classification: 16S
Sequencing Information
Instrument: Illumina MiSeq
Library Layout: PAIRED
Bioproject: PRJNA378359
Geographic Information
Country: Puerto Rico
Continent: North America
Location Name: Puerto Rico
Latitude/Longitude: 18.179305 N 66.773333 W
Sample Information
Environmental Information
Download Files
Analysis Files
Raw Sequencing Files
Direct download from NCBI SRA
Run ID
File Size
SRR5319324
101.7 MB
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Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.
Taxonomic Classification
Functional Annotation
Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.
Chemoheterotrophy
122
Chemoheterotrophy
Aerobic_Chemoheterotrophy
98
Aerobic_Chemoheterotrophy
Animal_Parasites_Or_Symbionts
17
Animal_Parasites_Or_Symbionts
Fermentation
16
Fermentation
Human_Associated
16
Human_Associated
Nitrate_Reduction
16
Nitrate_Reduction
Human_Pathogens_All
15
Human_Pathogens_All
Ureolysis
14
Ureolysis
Nitrate_Respiration
12
Nitrate_Respiration
Nitrogen_Respiration
12
Nitrogen_Respiration
Methanol_Oxidation
9
Methanol_Oxidation
Methylotrophy
9
Methylotrophy
Aromatic_Compound_Degradation
8
Aromatic_Compound_Degradation
Photosynthetic_Cyanobacteria
4
Photosynthetic_Cyanobacteria
Oxygenic_Photoautotrophy
4
Oxygenic_Photoautotrophy
Photoautotrophy
4
Photoautotrophy
Phototrophy
4
Phototrophy
Intracellular_Parasites
3
Intracellular_Parasites
Nitrogen_Fixation
2
Nitrogen_Fixation
Dark_Oxidation_Of_Sulfur_Compounds
1
Dark_Oxidation_Of_Sulfur_Compounds
Human_Pathogens_Nosocomia
1
Human_Pathogens_Nosocomia
Human_Gut
1
Human_Gut
Mammal_Gut
1
Mammal_Gut
Predatory_Or_Exoparasitic
1
Predatory_Or_Exoparasitic
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