SRR5319323 - Coffea arabica

Basic Information

Run: SRR5319323

Assay Type: AMPLICON

Biosample: SAMN06545451

Bytes: 47518184

Center Name: UNIVERSITY OF PUERTO RICO-RIO PIEDRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA378359

Geographic Information

Country: Puerto Rico

Continent: North America

Location Name: Puerto Rico

Latitude/Longitude: 18.178444 N 66.743333 W

Sample Information

Host: Coffea arabica

Isolation: -

Biosample Model: -

Collection Date: 2024-06-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5319323
45.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 38
Aerobic_Chemoheterotrophy 27
Fermentation 7
Nitrate_Reduction 6
Methanol_Oxidation 5
Methylotrophy 5
Ureolysis 5
Aromatic_Compound_Degradation 4
Human_Pathogens_All 3
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Nitrate_Respiration 2
Nitrogen_Respiration 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Human_Pathogens_Nosocomia 1
Intracellular_Parasites 1
Predatory_Or_Exoparasitic 1
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