SRR5319304 - Coffea arabica

Basic Information

Run: SRR5319304

Assay Type: AMPLICON

Biosample: SAMN06545470

Bytes: 57075757

Center Name: UNIVERSITY OF PUERTO RICO-RIO PIEDRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA378359

Geographic Information

Country: Puerto Rico

Continent: North America

Location Name: Puerto Rico

Latitude/Longitude: 18.389800 N 66.055555 W

Sample Information

Host: Coffea arabica

Isolation: -

Biosample Model: -

Collection Date: 2024-06-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR5319304

54.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 22

Chemoheterotrophy

Aerobic_Chemoheterotrophy 17

Aerobic_Chemoheterotrophy

Fermentation 5

Fermentation

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Nitrate_Reduction 4

Nitrate_Reduction

Human_Pathogens_All 3

Human_Pathogens_All

Human_Associated 3

Human_Associated

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Ureolysis 2

Ureolysis

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Sulfite_Respiration 1

Sulfite_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Arsenite_Oxidation_Detoxification 1

Arsenite_Oxidation_Detoxification

Dissimilatory_Arsenite_Oxidation 1

Dissimilatory_Arsenite_Oxidation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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